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The projects and published results in this group deal with magnetic resonance spectroscopy.
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We investigate machine learning and control approahes for analysis and quantification of
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magnetic resonance spectra and developing MR pulse sequences.
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# People
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* [**Frank C Langbein**](https://qyber.black/xis10z), [School of Computer Science and Informatics](https://www.cardiff.ac.uk/computer-science), [Cardiff University](https://www.cardiff.ac.uk/); [langbein.org](https://langbein.org/)
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* [**Sophie Schirmer**](https://qyber.black/lw1660), [Physics](https://www.swansea.ac.uk/physics), [Swansea University](https://www.swansea.ac.uk/)
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* [**Chris Jenkins**](https://qyber.black/max), [Swansea University](https://www.swansea.ac.uk), [Cardiff University](https://www.cardiff.ac.uk/)
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* [**Max Chandler**](https://qyber.black/max), [School of Computer Science and Informatics](https://www.cardiff.ac.uk/computer-science), [Cardiff University](https://www.cardiff.ac.uk/)
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* [**Oktay Karakus**](https://qyber.black/oktay), [School of Computer Science and Informatics](https://www.cardiff.ac.uk/computer-science), [Cardiff University](https://www.cardiff.ac.uk/)
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* [André Döring](https://qyber.black/andre), [Cardiff University](https://www.cardiff.ac.uk/)
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* [Frank Rosler](https://qyber.black/rankroesler), [Cardiff University](https://www.cardiff.ac.uk/)
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# Publications
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* M Chandler, C Jenkins, SM Shermer, FC Langbein. **MRSNet: Metabolite Quantification from Edited Magnetic Resonance Spectra With Convolutional Neural Network**. In preparation, 2019.
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[[arxiv:1909.03836]](https://arxiv.org/abs/1909.03836)
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[[PDF]](uploads/965c69ff739d7f871311c224f08f95e0/MRSNet.pdf)
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[[Details]](https://langbein.org/mrsnet-paper/)
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* C Jenkins, M Chandler, FC Langbein, SM Shermer. **Benchmarking GABA Quantification: A Ground Truth Data Set and Comparative Analysis of TARQUIN, LCModel, jMRUI and Gannet**. In preparation, 2021.
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[[arxiv:1909.02163]](https://arxiv.org/abs/1909.02163)
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[[PDF]](uploads/19b8c0b29bcfedefe1afc36705833d50/paper-benchmark.pdf)
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[[Details]](https://langbein.org/mrs_quant/)
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* C Jenkins, MChandler, FC Langbein, SM Shermer. **Quantification of edited magnetic resonance spectroscopy: a comparative phantom based study of analysis methods**. ISMRM 27th Annual Meeting & Exhibition, Montréal, QC, Canada, 11th-16th May 2019.
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[[PDF]](uploads/0416c7f452287926e7dcbedb69f2fb02/ISMRM_Quant.pdf)
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[[Details]](https://langbein.org/quantification-of-edited-magnetic-resonance-spectroscopy-a-comparative-phantom-based-study-of-analysis-methods/)
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* SM Schirmer, FC Langbein, C Jenkins, M Chandler. **Design of novel MRI pulse sequences for GABA quantification using optimal control**. In: 4th Int Symp on MRS of GABA, 2017.
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[[Details]](https://langbein.org/design-novel-mri-pulse-sequences-gaba-quantification-using-optimal-control/)
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* C Jenkins, M Chandler, FC Langbein, SM Schirmer. **Modelling, Optimization and QA for Magnetic Resonance Spectroscopy**. All Wales Medical Physics and Engineering Summer Meeting, short talk and poster, 2017.
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[[PDF]][Poster-Chris.pdf](uploads/41389cbefe64785c44b4fa990802af8e/Poster-Chris.pdf)
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[[Details]](https://langbein.org/modelling-optimization-qa-magnetic-resonance-spectroscopy/)
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* M Chandler, FC Langbein, C Jenkins, SM Schirmer. **Quantum Control for Magnetic Resonance Spectroscopy**. All Wales Medical Physics and Engineering Summer Meeting, poster, 2017.
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[[PDF]](uploads/5a5196acdb3271bec3b914dce10dc116/Max_Chandler_Poster_portrait.pdf)
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[[Details]](https://langbein.org/quantum-control-magnetic-resonance-spectroscopy/)
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# PhDs
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* M Chandler. **New methods in quantification and RF pulse optimisation for magnetic resonance spectroscopy**. PhD Thesis, Cardiff University, School of Computer Science and Informatics, 2019.
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[[PDF]](uploads/5752062d13fb807f6feb9ecb0a08c218/2019chandlermsphd.pdf)
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* C Jenkins. **New techniques for quantification of biomarkers and metabolites by magnetic resonance imaging and spectroscopy**. PhD Thesis, Swansea University, College Of Science, 2019.
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[[DOI:10.23889/Suthesis.50804]](http://dx.doi.org/10.23889/Suthesis.50804)
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# Code
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* M Chandler, C Jenkins, SM Shermer, FC Langbein. **MRSNet**, V1.0. Code, https://qyber.black/MRIS/mrsnet, https://github.com/MaxChandler/MRSNet, 16th August 2019. [DOI:10.6084/m9.figshare.9824417.v1]
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# Data
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* SM Shermer, C Jenkins, M Chandler, FC. Langbein. **Magnetic resonance spectroscopy data for GABA quantification using MEGAPRESS pulse sequence**. Data set, IEEE Data Port, 15th August 2019.
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[DOI:10.21227/ak1d-3s20](http://dx.doi.org/10.21227/ak1d-3s20)
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# Locations
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The wiki is written and maintained on [Qyber\black](https://qyber.black/) at https://qyber.black/pca/info-mrs/
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# License
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[](https://creativecommons.org/licenses/by-nc-sa/4.0/) This wiki is licensed under a [Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License](https://creativecommons.org/licenses/by-nc-sa/4.0/).
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The publications, code, data, etc. may be under a different license. Check the relevant information provided with these products. |
